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The Collateral Truth

Summary:

​"The boy she remembers is a ghost. You and I... we are the only ones who are actually alive in this lie."

​Returning to his seventeen-year-old body was supposed to be the end of the nightmare, but for Shinichi Kudo, the real horror is realizing that his presence is a death sentence for everyone he loves. When the Black Organization targets Ran to send a message, Shinichi realizes that proximity is a weapon—and he’s been pointing it at her his whole life.

​To save her, he has to become the villain.

​In the high-stakes game of shadows, Shinichi realizes that he didn’t just lose his childhood—he outgrew it. And the only person who can walk beside him in the fire isn't the girl from his past, but the woman who survived it with him.

Notes:

​"Welcome to The Collateral Truth. This story explores the darker, more psychological side of Shinichi’s return to his original form. I’ve always felt that his bond with Shiho, forged through their shared survival, is something that fundamentally changed him. This fic is a slow-burn exploration of that change, the guilt of leaving the past behind, and the dangerous game of shadows they play to stay alive. Expect a mature tone and deep character dives. Thank you for reading!"

Chapter 1: The Savior and the Shadow

Summary:

After a year of living as ghosts, Shinichi Kudo and Shiho Miyano return to Teitan High to reclaim their lives. But the "Great Detective" quickly finds that he has outgrown his old skin, and his return sparks a dangerous wave of suspicion. Between the suffocating expectations of a "childhood sweetheart" and a mysterious partner who speaks his language, Shinichi realizes that his homecoming is anything but a celebration.

Notes:

(See the end of the chapter for notes.)

Chapter Text

The uniform felt like a costume—a cheap polyester lie.

​Shinichi Kudo stood before the full-length mahogany mirror in his bedroom, his fingers fumbling with the knot of his green Teitan High tie. For nearly a year, he had looked into mirrors and seen a child—a ghost of his former self trapped in a shrunken ribcage. Now, the height was back. The broadness of his shoulders was back. But as he stared into his own blue eyes, the "Great Detective of the East" looked back with a gaze that felt decades older than seventeen.

​His skin felt tight, a physical reminder of the agonizing cellular reconstruction he had endured only forty-eight hours prior. The antidote wasn't a miracle; it was a violent chemical war that had left him shaking and feverish in the basement of the Agasa residence.

​"You're brooding again, Kudo-kun. It adds wrinkles that the cameras won't like."

​The voice was cool, clinical, and laced with a familiar brand of sarcasm that acted like an anchor to his drifting thoughts. Shinichi turned to see Shiho Miyano leaning against the doorframe of his library.

​She was a vision in the Teitan girls' uniform, though she wore it with a profound sense of irony. Her strawberry-blonde hair was tucked neatly behind one ear, exposing the sharp, intelligent line of her jaw. To any other observer, she was a stunning new transfer student. To Shinichi, she was the only person on the planet who truly knew who he was. She wasn't just his chemist; she was his co-conspirator.

​"I'm not brooding," Shinichi lied, grabbing his blazer from the bed. "I’m just... recalibrating. It’s a lot of space to take up all of a sudden."

​"It's a simple calculation," she countered, stepping into the room. The scent of her—something like expensive chemicals and faint coffee—filled the space between them. "Suppress the trauma, smile at the girls who missed their hero, and try not to solve a triple homicide before the lunch bell rings. Though, for you, I imagine the performance of 'normalcy' is the most grueling case you’ve ever taken."

​Shinichi stepped closer, his expression dropping the "detective" mask. "Are you sure about this, Shiho? You don’t have to do this. My father has the connections to disappear you. A new name, a quiet life in America, or even London. You don't have to walk back into the lion's den with me."

​Shiho looked away, her gaze landing on a row of dusty Sherlock Holmes first editions. For a moment, the untouchable "Sherry" vanished, replaced by a girl who had lost everything before she was old enough to vote.

​"And leave my only lab partner behind?" she asked, her voice dropping to a whisper. "Who would keep you from doing something remarkably stupid? Besides..." She met his eyes again, and the raw vulnerability there made his chest ache. "I don't have anyone else, Shinichi. The shadow follows the light. If you’re going back into the world, I suppose I’m stuck in your orbit."

******

​The Gates of Teitan

​The walk to school was a sensory overload. The sound of bicycle bells, the smell of street food, the chatter of students—it was all too loud, too bright. As they reached the iron gates of Teitan High, the atmosphere shifted instantly.

​The morning gossip died in an abrupt, choked silence.

​"Is that... Kudo?"

"No way. The police said he was on a long-term case..."

"Who’s the girl? She looks like a model."

​Shinichi kept his head high, his "public" persona sliding into place like a well-oiled machine. He felt Shiho’s pace falter beside him. Her hand twitched near the hem of her blazer, a tell-tale sign of her anxiety. Without thinking, he shifted his path, his arm brushing against hers in a silent gesture of solidarity.

​"Keep walking," he whispered, his voice barely audible over the rising murmur of the crowd. "You're just a student, Shiho. Just a girl going to class. They aren't looking for Sherry. They're looking at a pretty girl."

​"I despise being 'looked at,'" she murmured back, her eyes sharp, scanning the rooftops and the windows of the school building with the practiced paranoia of a fugitive.

​Then, the crowd parted, and the one person Shinichi wasn't ready to face appeared.

​Ran Mouri was standing by the shoe lockers, her breath hitching as she saw him. She looked exactly as he remembered—kind, radiant, and utterly innocent of the darkness he had been living in.

​"Shinichi!" She ran toward them, stopping just short of throwing her arms around him, her face a chaotic map of relief and confusion. "You’re actually here. You’re... really back for good?"

​The guilt hit Shinichi like a physical blow. Looking at Ran was like looking at a version of himself that had died the night he followed Vodka behind Tropical Land. "Yeah, Ran. I'm back. The case... it’s finally under control."

​Ran’s eyes drifted to Shiho, and the curiosity in her gaze was tinged with a sudden, sharp insecurity. "And... who is this?"

​"This is Shiho Miyano," Shinichi said. Saying her real name felt like a victory and a confession all at once. "Her parents were... colleagues of my father’s. She’s transferring here for her final years. My parents asked me to look out for her while she settles in."

​Shiho stepped forward, her mask of "Haibara-coldness" perfectly intact. "It is a pleasure to meet you, Mouri-san," she said, her tone formal and distant. "Kudo-kun has spoken of you often."

​Ran flinched slightly at the 'Kudo-kun.' It was a stark reminder that this girl shared a level of formality and history with Shinichi that Ran couldn't quite place. "Oh... well, welcome! I’m the captain of the Karate club. If you need anything, or if Shinichi is being too much of a mystery-geek..."

​"I don't think she's much for sports, Ran," Shinichi interrupted, his protective instincts flaring. He didn't want Ran too close to Shiho—not because of jealousy, but because the contrast between them was too painful to bear. "We should get to homeroom. The teachers will want to grill me about my absence."

​"Right," Ran said, her smile fading into something puzzled and hurt. "I'll see you in class?"

​"Yeah."

​As they walked away, the silence between Shinichi and Shiho was heavy. It wasn't until they were tucked away in the quiet of the third-floor stairwell that Shiho spoke.

​"You're a terrible liar, Detective," she said, her voice like silk. "You sounded like you were introducing a sensitive asset, not a classmate. You’re going to break her heart before the first period is over if you keep acting like that."

​Shinichi gripped the railing so hard his knuckles turned white. "It’s hard to pretend I’m the same person who left her. I’m not that boy anymore, Shiho."

​"Then stop trying to be him," she said, stepping up to the landing so she was eye-level with him. Her gaze was piercing. "The boy she remembers is a ghost. You and I... we are the only ones who are actually alive in this lie."

******

The "Great Detective" had been in the building for less than twenty minutes, and already, the air in Class 2-B was thick with the kind of electricity that usually preceded a scandal.

The classroom of 2-B was exactly as he had left it, yet it felt like a museum exhibit of a life he no longer owned.

​Shinichi sat at his desk, his jaw tight. He could hear the whispers behind him, buzzing like a hornet’s nest that had been kicked.

​"Welcome back, Kudo!"

​The shout came from the back of the room, followed by a chorus of whistles and catcalls. Within seconds, a group of boys had surrounded his desk, leaning over him with the boisterous, suffocating energy of teenagers who hadn't seen a ghost in a year.

​"The Great Detective returns! Man, the police must be falling apart without you," one teased, clapping him on the back. "So, did you finally catch the international jewel thief, or were you just dodging exams?"

​Shinichi forced a chuckle, the mask of the cocky high school detective sliding on with practiced ease. "Something like that," he said, his voice smooth. "The paperwork alone was a nightmare."

​"And look at him!" another chimed in, pointing toward the front of the room where Ran was sitting. "Back for two days and he’s already got the 'wife' waiting for him with a home-cooked lunch, I bet. Honestly, Ran, how do you put up with him? You should have made him sign a contract before he left."

​The room erupted in "Oohs" and laughter. Ran turned in her seat, her cheeks flushing a deep pink. She didn't shy away from the comment; instead, she tilted her head, a proprietary smile touching her lips. "I think a contract is a bit much," she said, her voice carrying that sweet, sharp edge that always made Shinichi’s stomach tighten. "But he does owe me about a year’s worth of tropical land trips, doesn't he, Shinichi?"

​"The future Mrs. Kudo has spoken!" Sonoko Suzuki added, leaning over from the next aisle, her eyes narrowed with a playful but piercing intensity. "Better watch out, Shinichi. She’s been practicing her karate kicks on the punching bag at the gym thinking about your face."

"Let’s not get ahead of ourselves," Shinichi said, his voice a fraction colder than he intended. "We’re just... catching up."

The door slid open.

​Nakamichi-sensei entered, his face tight with the stress of handling a "special case" transfer. Behind him, the room seemed to dim as Shiho Miyano stepped into the light.

​"Class, settle down," the teacher announced, gesturing to the girl standing beside him. "We have a new student joining us today. She’s had a bit of a complicated transition from abroad, so I expect you all to be welcoming."

​Shiho Miyano didn't look like she wanted to be welcomed.

​She stood at the front of the room, her silhouette framed by the harsh morning light. She didn't offer a bow. She didn't offer a shy smile. She stood with her chin slightly tilted, her blue-green eyes scanning the room with a cold, predatory intelligence that made several students shift uncomfortably in their seats. She looked less like a student and more like a scientist observing a particularly uninteresting colony of bacteria.

​"Miyano Shiho," she said. Her voice was low, melodic, and as cold as a winter morning in London.

​"Is that... it?" Nakamichi-sensei asked, hovering awkwardly. "No hobbies? Interests? Where you moved from?"

​"I don't believe my personal history is a requirement for the curriculum," Shiho replied. She didn't raise her voice, but the finality in it left the teacher blinking in stunned silence.

​Her gaze swept across the room until it landed, with surgical precision, on Shinichi. For a split second, the ice in her eyes flickered—not with warmth, but with a grim, shared understanding. Then, she looked at the empty seat directly behind him.

​"I’ll sit there," she stated, not waiting for permission.

As she walked down the aisle, the sound of her shoes on the linoleum felt like a countdown. She passed Ran’s desk without so much as a glance, radiating an aura of such absolute detachment that Ran looked physically small in comparison.

As she sat down, Yamagishi, a boy from the row over, leaned across his desk, his eyes wide with curiosity. "Hey, Kudo," he whispered loudly, "Do you two already know each other? You guys looked awfully familiar at the gates this morning. What's the deal? Is she your girlfriend or something?"

​Shinichi felt Ran’s posture stiffen in front of him. He cleared his throat, his "detective" voice taking over to ground the situation. "She’s a family friend," he said, loud enough for the surrounding desks to hear. "My parents have known her family for years. But more than that, she was my partner on the long-term case that kept me away. My parents are hosting her while she settles into Japan, and they've asked me to look after her. We’ve worked closely together for months."

​"A partner, huh?" Hondo, another classmate, chimed in with a smirk. "That’s a professional-sounding word for a girl who looks like she just walked off a runway in Milan. You sly dog, Kudo. Bringing home a 'partner' like that while Ran-san is waiting? You're playing with fire."

​"A partner," Sonoko Suzuki repeated, pushing through the crowd to stand by Ran. Her eyes were narrowed like a prosecutor’s. "That’s a very convenient title for someone you were whispering with at the gates, Shinichi. Since when do you do 'private escort' duty for partners?"

​"Sonoko, stop it," Ran said, though her face was pale. She rested her hand on the corner of Shinichi's desk—a proprietary gesture. "Shinichi already told me. It’s a responsibility his parents took on. Right, Shinichi?"

​"The 'Future Mrs. Kudo' has spoken!" Yamagishi teased, nudging Shinichi. "But man, you’ve got to be careful. Ran-chan has been waiting a year for you. Bringing home a partner who looks like that? People are going to talk."

​"The 'Future Mrs. Kudo'?"

​Shiho’s voice drifted from behind Shinichi, cool and sharp as a scalpel. She hadn't even looked up from her notebook. "Is that a formal title in this district? Or just a local delusion?"

​The room went ice-cold.

​Ran’s smile faltered. Her eyes snapped to Shiho, and for the first time, a flash of something dark and defensive crossed her features. "It’s just a joke the class has, Miyano-san," Ran said, her voice tight. "We’ve been together since we were children. People tend to... assume."

​"Assumption is the mother of all failures, Mouri-san," Shiho replied, finally looking up. Her gaze was a challenge. "In my experience, 'together since childhood' is usually just another way of saying 'too afraid to move on.'"

​Sonoko gasped. "Listen here, you—"

​"Enough," Shinichi snapped, his voice ringing through the room. "We’re here to study."

The morning sessions were a blur of chalk dust and stifled whispers. For Shinichi, the transition was jarring; he was used to the high-stakes silence of a stakeout or the frantic tapping of a keyboard in Agasa’s basement. Sitting through a lecture on classical literature felt like trying to run a marathon in a straightjacket.

​As the bell chimed for the lunch break, the tension that had been simmering since the first period didn't dissipate; it merely changed shape.

​"Shinichi!" Ran was at his desk before the sound of the bell had fully faded. She had a bright, determined smile on her face, though it didn't quite reach her eyes. She held two bento boxes—one wrapped in a familiar blue cloth. "I made your favorite today."

Shinichi looked at the blue cloth. A year ago, he would have been ecstatic. Now, it just felt like a debt he couldn't repay. "Thanks, Ran. You didn't have to."

​"Of course I did," she said, her voice a pitch too high. She glanced pointedly at the back of Shiho’s head. "Since Miyano-san is new, why don't we all eat together on the roof? Sonoko is already heading up to grab our spot. It would be a great way for us to... get to know each other."

​Behind him, the sound of a closing notebook was crisp. Shiho stood up, her movements fluid and devoid of the awkwardness that plagued the other students. "How hospitable," she murmured, her voice dry. "I wouldn't want to intrude on the 'Future Mrs. Kudo’s' territory."

​Ran’s smile twitched, but she held her ground. "Not at all. Any friend of Shinichi’s family is welcome."

​The walk to the roof was a study in unspoken boundaries. Ran walked at Shinichi’s right, her hand occasionally brushing his arm, as if tethering him to the school. Shiho walked a half-step behind on his left—the position of a backup, a partner who watched the blind spots.

​When they reached the roof, Sonoko had already spread out a blanket. The air was cool, the wind whipping Shiho’s strawberry-blonde hair across her face. Without looking, and without a word being exchanged, Shinichi reached into his blazer pocket. He pulled out a small, plain black hair tie and held it out.

​Shiho took it, her fingers brushing his palm in a way that felt entirely routine. She tied her hair back without even a "thank you," and Shinichi simply returned to opening his bento.

​Sonoko’s eyes widened. "Since when do you carry hair ties, Shinichi?"

​"Hm?" Shinichi blinked, realized what he’d done, and felt a cold sweat prickle his neck. "Oh. Shiho... she loses them. Constantly. If I don't keep one, she ends up using a rubber band from the lab, and that’s a disaster for her hair."

​"It’s a logistical necessity," Shiho added smoothly, gracefully tucking her legs beneath her as she sat. "Kudo-kun is very good at managing small details. It’s why he’s a decent detective."

​The "Kudo-kun" and the "logistical necessity" felt like a private language. Ran sat down, her knuckles white as she gripped her chopsticks. The familiarity was galling—it wasn't the flirtatious energy of a new crush; it was the domestic, lived-in comfort of a couple who had spent hundreds of nights in the same room.

​"So, Miyano-san," Sonoko began, her tone a poor imitation of friendly curiosity. "Shinichi says you’re a 'partner.' What exactly does that mean? I mean, we’ve known Shinichi since he was wearing diapers, and he’s always been a solo act. Even the police call him the 'One-Man Force.'"

​"The world is bigger than Tokyo, Suzuki-san," Shiho replied, picking up a piece of grilled salmon with effortless precision. "On the cases we handled, a 'solo act' is a quick way to end up in a morgue. We specialize in different areas. He handles the external logic; I handle the internal chemistry. We’re... symbiotic."

​"Symbiotic," Ran repeated, the word tasting bitter. "That sounds very intense. I remember when we were kids, Shinichi used to say he didn't need anyone else to solve a mystery. He was so stubborn. Remember, Shinichi? That time you tried to find the lost kitten in the rain and got pneumonia because you wouldn't ask for help?"

​She laughed, a sweet sound intended to draw him back to their shared past, to remind him of the girl who had nursed him back to health.

​Shinichi felt the pull of the memory, but it felt like looking at a movie of someone else's life. "I remember," he said softly.

​"He’s still stubborn," Shiho interjected, her eyes meeting Ran’s. "But he’s learned that some storms are too big to weather alone. He’s also learned that coffee is a food group and that he shouldn't be allowed to handle delicate glass vials when he's had less than three hours of sleep."

​As she spoke, she reached over and snatched a slice of ginger from Shinichi’s bento. He didn't even flinch; he simply shifted the box toward her so she could reach the rest of the pickles he knew he wouldn't eat.

​"You hate ginger," he noted, his voice low and private.

​"I need the acidity to counteract this conversation," she whispered back.

​Ran watched the exchange—the shared box, the whispered confidence, the hair tie now around Shiho’s wrist. It was a thousand tiny cuts. To Sonoko and Ran, it wasn't just a partnership. It was a betrayal of a decade of "childhood friend" exclusivity.

​"You seem to know his current habits very well," Ran said, her voice trembling slightly despite her best efforts. "But I think I still know the real Shinichi. The one who loves lemon pie and hates being told what to do." She pushed the lemon pie toward him. "Eat up, Shinichi. You look like you haven't been taking care of yourself."

Shinichi caught the mocking glint in Shiho’s eyes and immediately felt the heat of Ran’s expectant gaze. He couldn't let the silence stretch. He wasn't ready for the fallout yet.

​"Actually, I think I can make room for it," Shinichi said, offering Ran a quick, boyish grin that felt like a mask he’d worn a thousand times. He took a bite of the lemon pie, the tart sweetness a jarring contrast to the bitter metallic taste of the morning. "It’s great, Ran. Exactly how I remembered it. Thanks."

​Ran’s shoulders visibly dropped, the tension leaving her frame as she beamed at him. "I knew it! I used the extra zest, just like you like." She cast a triumphant, if subtle, glance toward Shiho.

​Shiho didn't react. She simply continued her methodical consumption of her meal, her expression unreadable.

​The peace lasted for all of three minutes.

Sonoko was scrolling through her phone, her eyes suddenly widening as she tapped a headline. "Oh! Hey, look at this. It’s on the local Beika blog. It says that little brat Conan-kun and that grumpy kid Ai-chan both moved to the States last night."

​Shinichi’s heart didn't just skip a beat; it felt like it hit a wall. Beside him, he heard the faint, sharp clink of Shiho’s chopsticks hitting her plastic bento container.

​"Finally," Sonoko continued, oblivious to the sudden paralysis of the two people across from her. "I mean, it’s about time their parents came and got them. But Ran, didn't you say Conan-kun left a note saying he was going back to his 'parents' who are apparently distant cousins of the Kudos?"

​Ran’s expression softened, a genuine flicker of sadness crossing her face before it was quickly replaced by that new, sharp curiosity. "Yeah. He called me right before he left. He said he was going to miss 'Shinichi-niichan' the most because he learned so much about being a detective from him." She turned her gaze to Shinichi, her eyes searching his. "He really looked up to you, Shinichi. It’s almost like he was a mini-version of you. Sometimes I wonder if that’s why you were so comfortable leaving him here while you were away."

​Shinichi forced a chuckle, the sound feeling like sandpaper in his throat. He reached out and took another bite of the lemon pie to buy himself a second of composure. "Yeah, the kid was a handful. A distant relative of my parents, but he had a good head on his shoulders. I’m glad he’s back with his family in the States. He... he needed to be a kid again."

​"And what about Ai-chan?" Sonoko asked, looking directly at Shiho. "The Professor said she moved to America to join her 'relatives' too. Weird timing, isn't it? Both of them leaving on the same day that you two show up back at school?"

​Shiho didn't look up from her salmon. "Is it?" she asked, her voice a cool, steady stream. "The Professor and the Kudos have been close for decades. It’s hardly a conspiracy that two families decided to coordinate their travel arrangements. Besides, the girl—Ai, was it?—was far too intelligent for a local elementary school. She was wasting her time here."

​"You seem to know a lot about her 'intelligence,' Miyano-san," Ran noted, her voice dropping to that low, dangerous register. "And Shinichi, you’re still trembling."

​Shinichi looked down. His hand, resting on his knee, was indeed vibrating with suppressed adrenaline. He quickly moved it to grab his water bottle. "Just a caffeine crash, Ran. It’s been a long week."

​"He’s always been prone to nerves when a case ends," Shiho interjected, standing up and smoothing out her skirt with a crisp, final motion. "The thrill of the hunt leaves a vacuum behind. If you’ll excuse me, I need to go to the library before the next period. I find the atmosphere up here a bit... suffocating."

​She didn't wait for a response. She walked away, the hair tie Shinichi had given her still visible on her wrist like a brand.

******

The walk back to class was silent, but it wasn't the comfortable silence Shinichi had hoped for. Ran walked slightly ahead, her pace fast, her head held high.

​"She’s very intense, isn't she?" Sonoko whispered loudly as they reached the stairwell. "And she certainly seems to have a lot of 'habits' with you, Shinichi. Hair ties, ginger, private looks... if I didn't know better, I’d say she was trying to mark her territory."

​"Sonoko, please," Ran snapped, but there was no heat in the reprimand.

​When they reached the classroom, Ran stopped by her desk. She didn't look at Shinichi. Instead, she looked at the empty seat where Shiho would soon return.​

"I’m glad you liked the pie, Shinichi," Ran said, her voice soft, but carrying a tremor she couldn't quite hide. She didn't look at him; her eyes were fixed on the cherry blossoms dancing outside the classroom window. "But it feels... different. Everything feels different. You call her a 'partner,' and you talk about those kids like they were just a footnote in your life. But when you look at Miyano-san... it’s like you’re sharing a secret that I’m not allowed to hear."​

"Ran, it's just been a long case," Shinichi said, his heart aching at the genuine sadness in her eyes. "I just need time to adjust."​

"I’ve given you a year of time, Shinichi," she replied, finally looking at him. There was no anger yet—only a profound, lonely exhaustion. "I don't want to be a stranger to you. Please... don't let me become a stranger."​

She turned away, sitting down quietly. It wasn't a threat; it was a plea.​

Shinichi sat at his desk, the silence of the room weighing more than any lead. He watched as Shiho walked back in, her face a mask of cool indifference, but her eyes immediately sought his, checking for damage.​

He had survived the Black Organization's poison, but as he looked at Ran’s slumped shoulders and Shiho’s guarded gaze, he realized that surviving the truth might be even harder.

Notes:

​"This is just the beginning of a multi chapter journey. I always loved Conan and Haibara's dynamics and chemistry, so I wanted to write a fanfic for them.
This is my first time writing a story. What did you think of the chemistry between Shinichi and Shiho in this opening? Drop a comment and let me know your thoughts!"